The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0374
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 394378
End posion on genome 394452
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
agacaaaaac
tRNA gene sequence 
GGGCCCGTAGCCTAGCCAGGAAAGGGCGCCGGCCTCCGGAGCCGGAGATCCCGGGTTCAA
ATCCCGGCGGGCCCGcat
Downstream region at tRNA end position 
caacaccaat
Secondary structure (Cloverleaf model)
>At0374	Arg	CCG
                   c      Gcat caacaccaat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A A A          G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCCTAGCCAGGAAAGGGCGCCGGCCTCCGGAGCCGGAGATCCCGGGTTCAA
ATCCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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