The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0377
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 563621
End posion on genome 563770
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aacaggaaaa
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACTAAGGGGGTAGGCTCGAGACCTACTGCCCCGCGGAGGGGC
GCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
cactcctcac
Secondary structure (Cloverleaf model)
>At0377	Ser	CGA
                   a      GCCA cactcctcac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C T A        G     TGCCCCGCGGAGGGGCGC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACTAAGGGGGTAGGCTCGAGacccaacacagaaaaccctccg
caaaacaagagggttttccggctaaccagaaacgagagACCTACTGCCCCGCGGAGGGGC
GCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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