The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0380
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 625683
End posion on genome 625850
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tattataggt
tRNA gene sequence 
CCCGCGGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGACCGGGTGGTCGGGGGTTCAAGTC
CCCCCCGCGGGACCA
Downstream region at tRNA end position 
tttaatttat
Secondary structure (Cloverleaf model)
>At0380	Tyr	GTA
                   t      ACCA tttaatttat
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     C C C C C     A
        G A        A      | | | | |     A
      C     C T C G       G G G G G     C
      G     | | | |                 T T
      G     G A G C
        C A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGtggggaaaatctgagccccccacc
cgccagacatccccggaaacctggggaaatagaatgatggcggggcggcgaatagagggc
tcagcagatACCGGGTGGTCGGGGGTTCAAGTCCCCCCCGCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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