The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0386
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 798271
End posion on genome 798347
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
agggttttat
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGCGCTCGGTTGGCATCCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
tattactacg
Secondary structure (Cloverleaf model)
>At0386	Ala	GGC
                   t      ACCA tattactacg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGCGCTCGGTTGGCATCCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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