The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0387
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 810962
End posion on genome 811050
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
taattagaat
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACTAAGGGGCTGGCCTGGAGAGCCAGTGCCCCATACGGGGCG
CGCGGGTTCGAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
cttctttata
Secondary structure (Cloverleaf model)
>At0387	Ser	GGA
                   t      GCCA cttctttata
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C T A        G     TGCCCCATACGGGGCGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACTAAGGGGCTGGCCTGGAGAGCCAGTGCCCCATACGGGGCG
CGCGGGTTCGAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK