The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0388
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 841469
End posion on genome 841590
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aataaatggt
tRNA gene sequence 
GCGGGGGTGCCCGAGCCTGGTCAAAGGGGGCGGACTTAAGATCCGCTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
ccttatttta
Secondary structure (Cloverleaf model)
>At0388	Leu	TAA
                   t      ACCA ccttatttta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGTCAAAGGGGGCGGACTTAAGaccggcgggacaatatatta
accgccgaggggagATCCGCTGGCGTAGGCCTGCGTGGGTTCAAATCCCACCCCCCGCAC
CA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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