The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0389
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 851283
End posion on genome 851387
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position
atgatagggt
tRNA gene sequence
GCCGGGGTAGCTCAGCCTGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCCGGGGTTCAAA
TCCCCGCCCCGGCGctc
Downstream region at tRNA end position
tctcctattt
Secondary structure (Cloverleaf model)
>At0389	Asn	GTT
                   t      Gctc tctcctattt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCTCAGCCTGGTAGAGCGCCGGGCTGTTAacccacgggttcgaagaatagc
ctggcagacACCCGGTGGTCCGGGGTTCAAATCCCCGCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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