The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0390
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 864114
End posion on genome 864198
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agggagagga
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGGTGGTTCCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGcct
Downstream region at tRNA end position 
tctatgattc
Secondary structure (Cloverleaf model)
>At0390	Ser	GCT
                   a      Gcct tctatgattc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGGTGGTTCCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTCGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGGTGGTTCCCCGC
GCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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