The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0392
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 969002
End posion on genome 969114
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aattatgaat
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGACTAGGATGCGGGGTTCGGGTCCCCGTGACCCGGGGTTCA
AATCCCCGCGGGCCCAttc
Downstream region at tRNA end position 
ctaactaagt
Secondary structure (Cloverleaf model)
>At0392	Pro	CGG
                   t      Attc ctaactaagt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGACC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G *
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGACTAGGATGCGGGGTTCGGGacccctataaaagccgccgc
tgaacaaggggcggaacTCCCCGTGACCCGGGGTTCAAATCCCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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