The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0395
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1038694
End posion on genome 1038805
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
atacctagaa
tRNA gene sequence 
GCCGCCGTAGTATAGCCCGGCCAAGTATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCGGCAtat
Downstream region at tRNA end position 
aaaaatcatt
Secondary structure (Cloverleaf model)
>At0395	Glu	CTC
                   a      Atat aaaaatcatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTATAGCCCGGCCAAGTATGCGGGCCTCTCGAGCCCGTGtccacagggcca
atacaagaaggcccgtgcgcgggagACCCGGGTTCAAATCCCGGCGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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