The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0399 |
Genome ID | CP000575 |
Phylum/Class | Thermoproteota |
Species | Staphylothermus marinus F1 [CP000575] |
Start position on genome
|
1099327
|
End posion on genome
|
1099426
|
Amino Acid
|
Gln
|
Anticodon
|
CTG
|
Upstream region at tRNA start position
|
tgaaataagt
|
tRNA gene sequence
|
AGCCGGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGACCCCCGTGACCGGGGTTCGAAT CCCCGCCCGGCTACCA
|
Downstream region at tRNA end position
|
ttctatttac
|
Secondary structure (Cloverleaf model) | >At0399 Gln CTG
t ACCA ttctatttac
A - T
G - C
C - G
C - G
G - C
G - C
G - C T A
T G C C C C A
C G A C | | | | | G
G T C T G C G G G G C
G + | | + T T
C G G A T
C A A G TGAC
C - G
G - C
G - C
G - C
G - C
C C
T A
C T G *
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | AGCCGGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGgcccagttgtaaatgctggggag aACCCCCGTGACCGGGGTTCGAATCCCCGCCCGGCTACCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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