The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0401
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1102472
End posion on genome 1102579
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
gtgatattgg
tRNA gene sequence
GGGGCCGTAGTCTAGCCTGGCTAGGATGCGGGGCTTGGGCCCCCGTGACCCGGGGTTCAA
ATCCCCGCGGCCCCActa
Downstream region at tRNA end position
ctaactaatc
Secondary structure (Cloverleaf model)
>At0401	Pro	TGG
                   g      Acta ctaactaatc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGACC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C*      C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGCTAGGATGCGGGGCacactaggctccaaataggacctagt
gcccgagTTGGGCCCCCGTGACCCGGGGTTCAAATCCCCGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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