The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0402
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1106557
End posion on genome 1106680
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position
aatatgaaga
tRNA gene sequence
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGACCCGCTTTACCGCGGGTTCGA
ATCCCGCCCCCGGCTCCA
Downstream region at tRNA end position
aatttctagt
Secondary structure (Cloverleaf model)
>At0402	Cys	GCA
                   a      TCCA aatttctagt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TTTACC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGggccccataattcacatggact
ttaccctgtagggggttcatggaaACCCGCTTTACCGCGGGTTCGAATCCCGCCCCCGGC
TCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK