The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0403
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1116245
End posion on genome 1116333
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
taaaaacgtt
tRNA gene sequence 
GCCGCCGTAGCTCAGCCTGGTTGGAGCGCCGCCCTGGTAAGGCGGAGGTCCCGGGTTCGA
ATCCCGGCGGCGGCTttt
Downstream region at tRNA end position 
aacttctaat
Secondary structure (Cloverleaf model)
>At0403	Thr	GGT
                   t      Tttt aacttctaat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T G          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCTGGTTGGAGCGCCGCCCTGGTAattatctcctggaaAGGCGGA
GGTCCCGGGTTCGAATCCCGGCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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