The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0404
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1163786
End posion on genome 1163859
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
aagagtaaat
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGTGGAGCGCCCGGCTGATAACCGGGAGGTCGGGGGTTCGAA
TCCCCCCGGGCCCActc
Downstream region at tRNA end position 
aaattctatt
Secondary structure (Cloverleaf model)
>At0404	Ile	GAT
                   t      Actc aaattctatt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGTGGAGCGCCCGGCTGATAACCGGGAGGTCGGGGGTTCGAA
TCCCCCCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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