The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0405
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 427592
End posion on genome 427465
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ttaatgaata
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGTAGAGCGCCGGCCTTGTAAGCCGGTGGTCGCGGGTTCAAA
TCCCGCCGGCGGCTctc
Downstream region at tRNA end position 
ttttcctatt
Secondary structure (Cloverleaf model)
>At0405	Thr	TGT
                   a      Tctc ttttcctatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGTAGAGCGCCGGCCTTGTAagcccgaagagaccaaggaact
aattcaggcccgtacaatacataggccgggagAGCCGGTGGTCGCGGGTTCAAATCCCGC
CGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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