The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0406
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 622722
End posion on genome 622648
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
atacagagaa
tRNA gene sequence 
GCCGCCGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCGGCActt
Downstream region at tRNA end position 
tttctactct
Secondary structure (Cloverleaf model)
>At0406	Glu	TTC
                   a      Actt tttctactct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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