The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0410
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 693775
End posion on genome 693666
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
attataagtg
tRNA gene sequence 
GCCCGGGTAGCTCAGCCGGTAGAGCGCCGGGCTGTGGACCCGGAGGTCCCGGGTTCAAAT
CCCGGCCCGGGCCctt
Downstream region at tRNA end position 
aaaattagtt
Secondary structure (Cloverleaf model)
>At0410	His	GTG
                   g      Cctt aaaattagtt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTAGCTCAGCCGGTAGAGCGCCGGGCTGTGGacaaacccccaatgataaaagag
gggaaaagacagaaACCCGGAGGTCCCGGGTTCAAATCCCGGCCCGGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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