The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0411
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 883502
End posion on genome 883401
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atatagagga
tRNA gene sequence 
GCCGCCGTAGCTCAGCTCGGTAGAGCGCCGGCCTCGTAAGCCGGTGGTCGCGGGTTCAAA
TCCCGCCGGCGGCTcat
Downstream region at tRNA end position 
aatcaaacct
Secondary structure (Cloverleaf model)
>At0411	Thr	CGT
                   a      Tcat aatcaaacct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       G C G G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCTCGGTAGAGCGCCGGCCTCGTAtcgggtacttgattaccggagt
cgggaaAGCCGGTGGTCGCGGGTTCAAATCCCGCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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