The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0413
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 911866
End posion on genome 911771
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
aggtcttcat
tRNA gene sequence 
GGGCCCGTAGCCTAGCCTGGATAGGGCGCCGGCCTGCGGAGCCGGAGGCCCCGGGTTCAA
ATCCCGGCGGGCCCGctt
Downstream region at tRNA end position 
ctaataatta
Secondary structure (Cloverleaf model)
>At0413	Arg	GCG
                   t      Gctt ctaataatta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCCTAGCCTGGATAGGGCGCCGGCCTGCGGagaatagtagggttcgtggcc
AGCCGGAGGCCCCGGGTTCAAATCCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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