The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0414
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1021027
End posion on genome 1020954
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position
tattgaaaac
tRNA gene sequence
GCCGCCGTAGCTCAGCCTGGGAGAGCGCCCGGCTGAAGACCGGGTTGTCCGGGGTTCAAA
TCCCCGCGGCGGCAtct
Downstream region at tRNA end position
ttttcttcat
Secondary structure (Cloverleaf model)
>At0414	Phe	GAA
                   c      Atct ttttcttcat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     TTGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCTGGGAGAGCGCCCGGCTGAAGACCGGGTTGTCCGGGGTTCAAA
TCCCCGCGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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