The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0415
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1101838
End posion on genome 1101742
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position
agataataaa
tRNA gene sequence
GGGCCCGTAGCCTAGCCAGGATAGGGCGCCGGCCTCCTAAGCCGGAGACCCGGGGTTCGA
ATCCCCGCGGGCCCGcat
Downstream region at tRNA end position
atatttttcc
Secondary structure (Cloverleaf model)
>At0415	Arg	CCT
                   a      Gcat atatttttcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGACC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCCTAGCCAGGATAGGGCGCCGGCCTCCTAagcacagtgttttagcagggc
cAGCCGGAGACCCGGGGTTCGAATCCCCGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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