The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0417
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1198387
End posion on genome 1198279
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gaaaaagaag
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGCGCCGGTGATCCCGGGTTCAA
ATCCCGGCGGCCCCActa
Downstream region at tRNA end position 
ttggtttttt
Secondary structure (Cloverleaf model)
>At0417	Pro	GGG
                   g      Acta ttggtttttt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGggacaccccgctagccaggcc
tggtgtcacagagCGCCGGTGATCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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