The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0420
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 395126
End posion on genome 395216
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tttagattac
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGTCAAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActt
Downstream region at tRNA end position 
taaggttatg
Secondary structure (Cloverleaf model)
>At0420	Glu	TTC
                   c      Actt taaggttatg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGTCAagtgtaatgcgccgatAGTATGCGGGCCTTTCGAGCC
CGTGACCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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