The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0423
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 442196
End posion on genome 442268
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aagtatattt
tRNA gene sequence 
AGCCGGGTCGTCTAGCGGTCAAGGATCCAGGGCTCTGGCCCCTGGGACCAGGGTTCGAGT
CCCTGCCCGGCTAcct
Downstream region at tRNA end position 
ttgtggggat
Secondary structure (Cloverleaf model)
>At0423	Gln	CTG
                   t      Acct ttgtggggat
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T G
                    T     G T C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C A G G G     C
    G       + | | +                 T T
    T       G G A T
      C A A        C     GGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTCGTCTAGCGGTCAAGGATCCAGGGCTCTGGCCCCTGGGACCAGGGTTCGAGT
CCCTGCCCGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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