The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0424
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 499438
End posion on genome 499521
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
attcttagtt
tRNA gene sequence 
GCGGGGGTGCCCGAGCAGGTCAAAGGGGGCGGACTTAAGATCCGCTGGCGTAGGCCTGCG
TGGGTTCAAATCCCACCCCCCGCActg
Downstream region at tRNA end position 
tgggggagta
Secondary structure (Cloverleaf model)
>At0424	Leu	TAA
                   t      Actg tgggggagta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    A C G A        G      | | | | |     A
  G         G C C C       G T G G G     C
  G           | | |                 T T
  T         A G G G
    C A A          G     TGGCGTAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCAGGTCAAAGGGGGCGGACTTAAGATCCGCTGGCGTAGGCCTGCG
TGGGTTCAAATCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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