The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0425
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 512631
End posion on genome 512740
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ggtaaatagt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACCAAGGGGGTAGGCTCGAGACCTACTGCCTCTCCGAGGCAC
GCGGGTTCAAATCCCGCCCCCGGCGtta
Downstream region at tRNA end position 
gtttaaaatt
Secondary structure (Cloverleaf model)
>At0425	Ser	CGA
                   t      Gtta gtttaaaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TGCCTCTCCGAGGCAC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACCAAGGGGGTAGGCTCGAGaccatttccagcgtcaaggcgg
gcgACCTACTGCCTCTCCGAGGCACGCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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