The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0426
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 512779
End posion on genome 512878
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
tatattgatt
tRNA gene sequence 
GCGGGGGTGCCCGAGCAAGGTCAAAGGGGTCGGGCTCAGGCCCCGATGGTGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCAatt
Downstream region at tRNA end position 
ttagatatga
Secondary structure (Cloverleaf model)
>At0426	Leu	CAG
                   t      Aatt ttagatatga
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    A C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGTGTAGGCCTGC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G *
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCAAGGTCAAAGGGGTCGGGCTCAGGaccatatggtgagacCCCCG
ATGGTGTAGGCCTGCGTGGGTTCAAATCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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