The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0428
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 535180
End posion on genome 535254
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position
gaatttagat
tRNA gene sequence
GGACCCGTAGCTTAGCCAGGACAGAGTGCCAGTCTCCGGAACTGGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGctg
Downstream region at tRNA end position
tgggggatac
Secondary structure (Cloverleaf model)
>At0428	Arg	CCG
                   t      Gctg tgggggatac
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T T C G       C C G G G     C
  G         + | | +                 T T
  G         G A G T
    A C A          G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTTAGCCAGGACAGAGTGCCAGTCTCCGGAACTGGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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