The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0429
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 579685
End posion on genome 579758
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
agtatattgt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGTGCGTGGTTGGCATCCACGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCActc
Downstream region at tRNA end position 
ttttgtacta
Secondary structure (Cloverleaf model)
>At0429	Ala	GGC
                   t      Actc ttttgtacta
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | +                 T T
    G       G A G T
      G A A        G     AGGTC
                    C - G
                    G - C
                    T - A
                    G - C
                    G - C
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGTGCGTGGTTGGCATCCACGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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