The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0431
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 694093
End posion on genome 694183
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
aatatatctc
tRNA gene sequence 
GCCGCGGTAGTACAGCCCGGTCAAGTATGCGGGCCTCTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActc
Downstream region at tRNA end position 
tcttaggtgg
Secondary structure (Cloverleaf model)
>At0431	Glu	CTC
                   c      Actc tcttaggtgg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         C A T G       C C G G G     C
  G         | | | +                 T T
  G         G T A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTACAGCCCGGTCAagcttaatgcgccggtAGTATGCGGGCCTCTCAAGCC
CGTGACCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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