The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0433
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1096644
End posion on genome 1096740
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
aagttagagt
tRNA gene sequence 
GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCA
AATCCCGGCGGCCCCAtaa
Downstream region at tRNA end position 
ccacctcccc
Secondary structure (Cloverleaf model)
>At0433	Pro	GGG
                   t      Ataa ccacctcccc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGCCTGGGGatatttccctaaccaccagt
aCGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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