The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0434
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1111007
End posion on genome 1111090
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
atttttagtt
tRNA gene sequence 
GCGGGGGTGCCCGAGCTGGTCAAAGGGGGCGGACTCAAGATCCGCTGGCGAAGGCCTACG
CGGGTTCAAATCCCGTCCCCCGCAtcc
Downstream region at tRNA end position 
cccttattta
Secondary structure (Cloverleaf model)
>At0434	Leu	CAA
                   t      Atcc cccttattta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
    T C G A        G      + | | | |     A
  G         G C C C       G C G G G     C
  G           | | |                 T T
  T         A G G G
    C A A          G     TGGCGAAGGCCTAC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTGGTCAAAGGGGGCGGACTCAAGATCCGCTGGCGAAGGCCTACG
CGGGTTCAAATCCCGTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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