The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0436
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1189756
End posion on genome 1189830
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gttagtttat
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGACAGAGCGCTGGCCTTCGGAGCCAGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGctg
Downstream region at tRNA end position 
tgggggtaca
Secondary structure (Cloverleaf model)
>At0436	Arg	TCG
                   t      Gctg tgggggtaca
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGACAGAGCGCTGGCCTTCGGAGCCAGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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