The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0437
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1300343
End posion on genome 1300417
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position
gttagttcat
tRNA gene sequence
GGACCCGTAGCTTAGCCAGGACAGAGTGCTGGCCTGCGGAGCCAGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGttg
Downstream region at tRNA end position
tgggggtaca
Secondary structure (Cloverleaf model)
>At0437	Arg	GCG
                   t      Gttg tgggggtaca
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T T C G       C C G G G     C
  G         + | | +                 T T
  G         G A G T
    A C A          G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTTAGCCAGGACAGAGTGCTGGCCTGCGGAGCCAGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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