The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0440
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 2208914
End posion on genome 2208989
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
taaattagtg
tRNA gene sequence 
GGGCCCGTGGTCTAGCTAGGATTAGGATGCGGCGTTCGGGTCGCCGTGGTCCCGGGTTCA
AATCCCGGCGGGCCCAaac
Downstream region at tRNA end position 
tacaaagtct
Secondary structure (Cloverleaf model)
>At0440	Pro	CGG
                   g      Aaac tacaaagtct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        G      | | | | |     A
  A         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A T T A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    C - G
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGCTAGGATTAGGATGCGGCGTTCGGGTCGCCGTGGTCCCGGGTTCA
AATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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