The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0441
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 48109
End posion on genome 48034
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
gttatagtga
tRNA gene sequence
GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGGCTTGGGCCCTGGTGGTCCCGGGTTCA
AATCCCGGCGGCCCCAgac
Downstream region at tRNA end position
taaaaaattt
Secondary structure (Cloverleaf model)
>At0441	Pro	TGG
                   a      Agac taaaaaattt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGGCTTGGGCCCTGGTGGTCCCGGGTTCA
AATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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