The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0442
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 49294
End posion on genome 49161
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gatcgataat
tRNA gene sequence 
GGGCCCATAGCTCAGCCAGGTAGAGTGCCGGGCTCCAGACCCGGTGGTCCGGGGTTCAAG
TCCCCGTGGGCCCAtta
Downstream region at tRNA end position 
tttttagttt
Secondary structure (Cloverleaf model)
>At0442	Trp	CCA
                   t      Atta tttttagttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    A       | | | +                 T T
    G       G A G T
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCATAGCTCAGCCAGGTAGAGTGCCGGGCTCCAGatgagctgcattgggtcttaag
acccccttgttgggggatgatatagatctggaggagagACCCGGTGGTCCGGGGTTCAAG
TCCCCGTGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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