The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0448
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 458720
End posion on genome 458630
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tattaatatt
tRNA gene sequence 
GCGGCCGTCGTCTAGTCTGGATTAGGACGCTGGCCTCCCAAGCCAGCAATCCCGGGTTCG
AATCCCGGCGGCCGCAttc
Downstream region at tRNA end position 
atacttctct
Secondary structure (Cloverleaf model)
>At0448	Gly	CCC
                   t      Attc atacttctct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C T G A        C      | | | | |     G
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     CAATC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTCGTCTAGTCTGGATTAGGACGCTGGCCTCCCAttctttagagtggaaAGCCA
GCAATCCCGGGTTCGAATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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