The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0451
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 515780
End posion on genome 515706
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
ctattagaga
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGCTGCCCTGACGCGGCAGAAATCCTGGGTTCAA
GTCCCAGCGGGCCCAttt
Downstream region at tRNA end position 
gggggataac
Secondary structure (Cloverleaf model)
>At0451	Val	GAC
                   a      Attt gggggataac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G A C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C T G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AAATC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       C
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGTTAGGACGCTGCCCTGACGCGGCAGAAATCCTGGGTTCAA
GTCCCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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