The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0452
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 542643
End posion on genome 542559
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tcttattaat
tRNA gene sequence 
GCCGGGGTGCCCGAGTGGACTAAGGGGCTGGCCTGGAGAGCCAGTGTGGATCTTCCACGC
GCGGGTTCAAATCCCGCCCCCGGCGtag
Downstream region at tRNA end position 
tgggggattt
Secondary structure (Cloverleaf model)
>At0452	Ser	GGA
                   t      Gtag tgggggattt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C T A        G     TGTGGATCTTCCACGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGTGGACTAAGGGGCTGGCCTGGAGAGCCAGTGTGGATCTTCCACGC
GCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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