The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0453
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 563615
End posion on genome 563514
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
aattatgaat
tRNA gene sequence 
GCCGCCGTAGCTCAGCACGGTCAGAGCGCCGGCCTCGTAAGCCGGTGGTCCCGGGTTCAA
ATCCCGGCGGCGGCTtcc
Downstream region at tRNA end position 
caggtgctat
Secondary structure (Cloverleaf model)
>At0453	Thr	CGT
                   t      Ttcc caggtgctat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    A C G A        A      | | | | |     A
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCACGGTCAGAGCGCCGGCCTCGTAaggcctaagtaagaagtgatc
caggacAGCCGGTGGTCCCGGGTTCAAATCCCGGCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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