The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0456
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 610622
End posion on genome 610531
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atagttagat
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCCGCAGACCCGTTATTTTCGCGGGTTCA
AATCCCGCCCCCGGCTtct
Downstream region at tRNA end position 
taaaaaaata
Secondary structure (Cloverleaf model)
>At0456	Cys	GCA
                   t      Ttct taaaaaaata
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TATTTTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  C       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCCGCAGagtataacacgccgagACCCGT
TATTTTCGCGGGTTCAAATCCCGCCCCCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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