The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0457
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 648852
End posion on genome 648769
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atataatgct
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCCAAGGGGCTGGCCTTGAGAGCCAGTAGGGTTATCCCTGCG
TGGGTTCAAATCCCACCCCCGGCGttg
Downstream region at tRNA end position 
tggggttagg
Secondary structure (Cloverleaf model)
>At0457	Ser	TGA
                   t      Gttg tggggttagg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G T G G G     C
    G         | | |                 T T
    T       A G G G
      C C A        G     TAGGGTTATCCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGTCCAAGGGGCTGGCCTTGAGAGCCAGTAGGGTTATCCCTGCG
TGGGTTCAAATCCCACCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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