The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0459
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1071144
End posion on genome 1071070
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tttcatatat
tRNA gene sequence 
GCCGCGGTAGCTCAGCCTGGCTAGAGCGTTGCCCTGGTAAGGCAAAGGTCCCGGGTTCAA
ATCCCGGCCGCGGCTtac
Downstream region at tRNA end position 
ttttacaata
Secondary structure (Cloverleaf model)
>At0459	Thr	GGT
                   t      Ttac ttttacaata
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    C T A          G     AGGTC
                    T - A
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCTCAGCCTGGCTAGAGCGTTGCCCTGGTAAGGCAAAGGTCCCGGGTTCAA
ATCCCGGCCGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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