The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0460
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1079156
End posion on genome 1079083
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
tgatataaat
tRNA gene sequence 
GGGCCCGTAGCTTAGCCTGGTAGAGCGTCCGGCTGATAACCGGAAGGCCGTGGGTTCAAA
TCCCACCGGGCCCAtga
Downstream region at tRNA end position 
gagggtcctc
Secondary structure (Cloverleaf model)
>At0460	Ile	GAT
                   t      Atga gagggtcctc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        A      | | | | |     A
    C       T T C G       G T G G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        G     AGGCC
                    T - A
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCCTGGTAGAGCGTCCGGCTGATAACCGGAAGGCCGTGGGTTCAAA
TCCCACCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK