The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0461
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1083512
End posion on genome 1083439
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
acataacaat
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGTGCTTGGCTTGCAACCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCActg
Downstream region at tRNA end position 
tgggggtgtc
Secondary structure (Cloverleaf model)
>At0461	Ala	TGC
                   t      Actg tgggggtgtc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | +                 T T
    G       G A G T
      G A A        G     AGGTC
                    C - G
                    T - A
                    T + G
                    G - C
                    G - C
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGTGCTTGGCTTGCAACCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK