The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0462
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1188479
End posion on genome 1188389
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atttttattt
tRNA gene sequence 
GCCGCCGTAGCTCAGCACGGCCAGAGCGCTGGCCTTGTAAGCCAGTGGTCCCGGGTTCAA
ATCCCGGCGGCGGCTtac
Downstream region at tRNA end position 
ttcctatcct
Secondary structure (Cloverleaf model)
>At0462	Thr	TGT
                   t      Ttac ttcctatcct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    A C G A        A      | | | | |     A
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    C C A          G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCACGGCCAGAGCGCTGGCCTTGTAaggatggcttcaggacAGCCA
GTGGTCCCGGGTTCAAATCCCGGCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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