The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0464
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 1241050
End posion on genome 1240959
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
atattatcat
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTCCTAAGCCGGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGcta
Downstream region at tRNA end position 
tacttttaat
Secondary structure (Cloverleaf model)
>At0464	Arg	CCT
                   t      Gcta tacttttaat
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTCCTAgtcggcgctgagaagacAGCC
GGTGGTCCCGGGTTCAAATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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