The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0465
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 2160161
End posion on genome 2160071
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position
taattatctc
tRNA gene sequence
GCGGCCGTCGTCTAGTCTGGATTAGGACGCTGGCCTTCCAAGCCAGCAATCCCGGGTTCG
AATCCCGGCGGCCGCAtta
Downstream region at tRNA end position
aaaatattgt
Secondary structure (Cloverleaf model)
>At0465	Gly	TCC
                   c      Atta aaaatattgt
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C T G A        C      | | | | |     G
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     CAATC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTCGTCTAGTCTGGATTAGGACGCTGGCCTTCCAtcagtcagggaggagAGCCA
GCAATCCCGGGTTCGAATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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